PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0088s0022.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family GATA
Protein Properties Length: 111aa    MW: 11947.6 Da    PI: 9.7815
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0088s0022.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.71.1e-154985135
                 GATA  1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C++Cg  +  Tp++R gp g+k+LCnaCGly++ +g+
  Kaladp0088s0022.2.p 49 CTHCGIGSnsTPMMRIGPAGPKSLCNACGLYWKNTGR 85
                         ****865556***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF003201.3E-134985IPR000679Zinc finger, GATA-type
CDDcd002023.30E-114994No hitNo description
SMARTSM004012.1E-94996IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.7E-154990IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.66E-114994No hitNo description
PROSITE profilePS501149.3024999IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 111 aa     Download sequence    Send to blast
MFVKKWLSVG NCRLPRSKGQ FFSEKTVDCG GNNTKDSGPS NSLRYLNGCT HCGIGSNSTP  60
MMRIGPAGPK SLCNACGLYW KNTGRLRDLS SRSKASSHDL PEVGHFLHEG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003544834.13e-23PREDICTED: GATA transcription factor 25-like
SwissprotQ9LRH64e-22GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0B2S5H74e-24A0A0B2S5H7_GLYSO; GATA transcription factor 25
TrEMBLI1MB134e-23I1MB13_SOYBN; Uncharacterized protein
STRINGGLYMA14G36150.11e-22(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-23GATA-type zinc finger protein with TIFY domain